On the electrical supply to my house, I've got a 6600v single-phase feed buried along my driveway that feeds a transformer on a pad in my front yard, that supplies 120-0-120 volts to the distribution panel. The neutral (0-volt) line is grounded both by a buried copper rod at the transformer and to my copper water lines at the breaker box. There is no separation between neutral and ground--they are connected in the panel. Since most residential well pumps run from 240v, it would seem that either side of the pump electrical feed contacting the ground potential of the casing would trip the breaker whether or not the ground line is bonded to the well casing--they should be at the same potential, but they might not be--because galvanized or bare pipe will corrode in contact with soil and exhibit something much less of a perfect ground.
With dry sandy soil, and PVC water lines to the house I could see that this might be a real safety problem.
I'm not disagreeing with the need to electrically connect the ground lead to the well casing; just trying to offer an explanation of the reasoning behind it.